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1.
Sci Rep ; 14(1): 7212, 2024 03 27.
Artigo em Inglês | MEDLINE | ID: mdl-38532013

RESUMO

The endovascular neural interface provides an appealing minimally invasive alternative to invasive brain electrodes for recording and stimulation. However, stents placed in blood vessels have long been known to affect blood flow (haemodynamics) and lead to neointimal growth within the blood vessel. Both the stent elements (struts and electrodes) and blood vessel wall geometries can affect the mechanical environment on the blood vessel wall, which could lead to unfavourable vascular remodelling after stent placement. With increasing applications of stents and stent-like neural interfaces in venous blood vessels in the brain, it is necessary to understand how stents affect blood flow and tissue growth in veins. We explored the haemodynamics of a stent-mounted neural interface in a blood vessel model. Results indicated that blood vessel deformation and tapering caused a substantial change to the lumen geometry and the haemodynamics. The neointimal proliferation was evaluated in sheep implanted with an endovascular neural interface. Analysis showed a negative correlation with the mean Wall Shear Stress pattern. The results presented here indicate that the optimal stent oversizing ratio must be considered to minimise the haemodynamic impact of stenting.


Assuntos
Hemodinâmica , Stents , Animais , Ovinos , Circulação Coronária/fisiologia , Neointima
2.
Int J Biol Macromol ; 262(Pt 1): 130024, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-38340931

RESUMO

The water-soluble chitosan derivative (WSCD) was made by mixing chitosan with sodium hydroxide, treating the mixture with chloroacetic acid, and then forming a Schiff base with vanillin in an acidic medium. In this study, we examined the corrosion-inhibiting ability of a WSCD on mild steel surfaces in acidic environments. Weight loss, EIS, PDP, LPS, and OCP measurements were used to study the corrosion resistance on mild steel surfaces in 1 M HCl solutions with known concentrations of WSCD. The results show that WSCD functions effectively as a mixed-type anodic and cathodic inhibitor, providing 87 % corrosion inhibition efficiency at 75 ppm. Using SEM to investigate the morphology of corroded mild steel with and without varying amounts of WSCD, impedance measurements show the development of a thin film of inhibitor on the metal surface, the extent of which increases as the inhibitor concentration rises. The WSCD molecule first adsorbs on mild steel and follows Langmuir adsorption isotherm. It is found that the (∆Gads0)adsorption's free energy is -17.473 kJ/mol. The contact angle measurements confirm that the hydrophobicity of the metal surface has increased as a result of the inhibitor's thin film development.


Assuntos
Benzaldeídos , Quitosana , Aço , Corrosão , Água , Propriedades de Superfície , Ácidos
3.
Int J Biol Macromol ; 264(Pt 1): 130151, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38403227

RESUMO

BACKGROUND: Reactivation of telomerase is a hallmark of cancer and the majority of cancers over-express telomerase. Telomerase-dependent telomere length maintenance confers immortality to cancer cells. However, telomere length-independent cell survival functions of telomerase also play a critical role in tumorigenesis. Multiple telomerase inhibitors have been developed as therapeutics and include anti-sense oligonucleotides, telomerase RNA component targeting agents, chemical inhibitors of telomerase, small molecule inhibitors of hTERT, and telomerase vaccine. In general, telomerase inhibitors affect cell proliferation and survival of cells depending on the telomere length reduction, culminating in replicative senescence or cell death by crisis. However, most telomerase inhibitors kill cancer cells prior to significant reduction in telomere length, suggesting telomere length independent role of telomerase in early telomere dysfunction-dependent cell death. METHODS: In this study, we explored the mechanism of cell death induced by three prominent telomerase inhibitors utilizing a series of genetically encoded sensor cells including redox and DNA damage sensor cells. RESULTS: We report that telomerase inhibitors induce early cell cycle inhibition, followed by redox alterations at cytosol and mitochondria. Massive mitochondrial oxidation and DNA damage induce classical cell death involving mitochondrial transmembrane potential loss and mitochondrial permeabilization. Real-time imaging of the progression of mitochondrial oxidation revealed that treated cells undergo a biphasic mitochondrial redox alteration during telomerase inhibition, emphasizing the potential role of telomerase in the redox regulation at mitochondria. Additionally, silencing of hTERT confirmed its predominant role in maintaining mitochondrial redox homeostasis. Interestingly, the study also demonstrated that anti-apoptotic Bcl-2 family proteins still confer protection against cell death induced by telomerase inhibitors. CONCLUSION: The study demonstrates that redox alterations and DNA damage contribute to early cell death by telomerase inhibitors and anti-apoptotic Bcl-2 family proteins confer protection from cell death by their ability to safeguard mitochondria from oxidation damage.


Assuntos
Neoplasias , Telomerase , Humanos , Telomerase/genética , Telomerase/metabolismo , Neoplasias/metabolismo , Inibidores Enzimáticos/metabolismo , Morte Celular , Telômero/metabolismo , Apoptose , Mitocôndrias/metabolismo , Oxirredução , Dano ao DNA
4.
Artigo em Inglês | MEDLINE | ID: mdl-38082814

RESUMO

Hemodynamic changes in stented blood vessels play a critical role in stent-associated complications. The majority of work on the hemodynamics of stented blood vessels has focused on coronary arteries but not cerebral venous sinuses. With the emergence of endovascular electrophysiology, there is a growing interest in stenting cerebral blood vessels. We investigated the hemodynamic impact of a stent-mounted neural interface inside the cerebral venous sinus. The stent was virtually implanted into an idealized superior sagittal sinus (SSS) model. Local venous blood flow was simulated. Results showed that blood flow was altered by the stent, generating recirculation and low wall shear stress (WSS) around the device. However, the effect of the electrodes on blood flow was not prominent due to their small size. This is an early exploration of the hemodynamics of a stent-mounted neural interface. Future work will shed light on the key factors that influence blood flow and stenting outcomes.Clinical Relevance-The study investigates blood flow through a stent-based electrode array inside the cerebral venous sinus. The hemodynamic impact of the stent can provide insight into neointimal growth and thrombus formation.


Assuntos
Veias Cerebrais , Hidrodinâmica , Stents , Vasos Coronários , Hemodinâmica
5.
Artigo em Inglês | MEDLINE | ID: mdl-38082944

RESUMO

The relationship between externally applied force and intraocular pressure was determined using an ex-vivo porcine eye model (N=9). Eyes were indented through the sclera with a convex ophthalmodynamometry head (ODM). Intraocular pressure and ophthalmodynamometric force were simultaneously recorded to establish a calibration curve of this indenter head. A calibration coefficient of 0.140 ± 0.009 mmHg/mN was established and was shown to be highly linear (r = 0.998 ± 0.002). Repeat application of ODM resulted in a 0.010 ± 0.002 mmHg/mN increase to the calibration coefficient.Clinical Relevance- ODM has been highlighted as a potential method of non-invasively estimating intracranial pressure. This study provides relevant data for the practical performance of ODM with similar compressive devices.


Assuntos
Pressão Intraocular , Oftalmodinamometria , Animais , Suínos , Oftalmodinamometria/métodos , Calibragem , Pressão Intracraniana , Esclera
6.
Artigo em Inglês | MEDLINE | ID: mdl-38082593

RESUMO

Wireless endovascular sensors and stimulators are emerging biomedical technologies for applications such as endovascular pressure monitoring, hyperthermia, and neural stimulations. Recently, coil-shaped stents have been proposed for inductive power transfer to endovascular devices using the stent as a receiver. However, less work has been done on the external transmitter components, so the maximum power transferable remains unknown. In this work, we design and evaluate a wearable transmitter coil that allows 50 mW power transfer in simulation.Clinical Relevance-This allows more accurate measurements and precise control of endovascular devices.


Assuntos
Dispositivos Eletrônicos Vestíveis , Tecnologia sem Fio , Fontes de Energia Elétrica , Simulação por Computador , Stents
7.
Artigo em Inglês | MEDLINE | ID: mdl-38082602

RESUMO

Low decoding accuracy makes brain-computer interface (BCI) control of a robotic arm difficult. Shared control (SC) can overcome limitations of a BCI by leveraging external sensor data and generating commands to assist the user. Our study explored whether reaching targets with a robot end-effector was easier using SC rather than direct control (DC). We simulated a motor imagery BCI using a joystick with noise introduced to explicitly control interface accuracy to be 65% or 79%. Compared to DC, our prediction-based implementation of SC led to a significant reduction in the trajectory length of successful reaches for 4 (3) out of 5 targets using the 65% (79%) accurate interface, with failure rates being equivalent to DC for 2 (1) out of 5 targets. Therefore, this implementation of SC is likely to improve reaching efficiency but at the cost of more failures. Additionally, the NASA Task Load Index results suggest SC reduced user workload.Clinical relevance-Shared control can minimise the impact of BCI decoder errors on robot motion, making robotic arm control using noninvasive BCIs more viable.


Assuntos
Interfaces Cérebro-Computador , Procedimentos Cirúrgicos Robóticos , Imagens, Psicoterapia , Movimento (Física) , Eletroencefalografia/métodos
8.
Artigo em Inglês | MEDLINE | ID: mdl-38083531

RESUMO

Brain-computer interfaces (BCI) have the potential to improve the quality of life for persons with paralysis. Sub-scalp EEG provides an alternative BCI signal acquisition method that compromises between the limitations of traditional EEG systems and the risks associated with intracranial electrodes, and has shown promise in long-term seizure monitoring. However, sub-scalp EEG has not yet been assessed for suitability in BCI applications. This study presents a preliminary comparison of visual evoked potentials (VEPs) recorded using sub-scalp and endovascular stent electrodes in a sheep. Sub-scalp electrodes recorded comparable VEP amplitude, signal-to-noise ratio and bandwidth to the stent electrodes.Clinical relevance-This is the first study to report a comparision between sub-scalp and stent electrode array signals. The use of sub-scalp EEG electrodes may aid in the long-term use of brain-computer interfaces.


Assuntos
Interfaces Cérebro-Computador , Couro Cabeludo , Animais , Ovinos , Couro Cabeludo/fisiologia , Potenciais Evocados Visuais , Qualidade de Vida , Eletroencefalografia/métodos , Eletrodos
9.
Artigo em Inglês | MEDLINE | ID: mdl-38083693

RESUMO

This work evaluates the feasibility of using a source level Brain-Computer Interface (BCI) for people with Multiple Sclerosis (MS). Data used was previously collected EEG of eight participants (one participant with MS and seven neurotypical participants) who performed imagined movement of the right and left hand. Equivalent current dipole cluster fitting was used to assess related brain activity at the source level and assessed using dipole location and power spectrum analysis. Dipole clusters were resolved within the motor cortices with some notable spatial difference between the MS and control participants. Neural sources that generate motor imagery originated from similar motor areas in the participant with MS compared to the neurotypical participants. Power spectral analysis indicated a reduced level of alpha power in the participant with MS during imagery tasks compared to neurotypical participants. Power in the beta band may be used to distinguish between left and right imagined movement for users with MS in BCI applications.Clinical Relevance- This paper demonstrates the cortical areas activated during imagined BCI-type tasks in a participant with Multiple Sclerosis (MS), and is a proof of concept for translating BCI research to potential users with MS.


Assuntos
Interfaces Cérebro-Computador , Esclerose Múltipla , Humanos , Eletroencefalografia , Estudos de Viabilidade , Imaginação
10.
Micromachines (Basel) ; 14(4)2023 Mar 24.
Artigo em Inglês | MEDLINE | ID: mdl-37420955

RESUMO

Electrodes are used in vivo for chemical sensing, electrophysiological recording, and stimulation of tissue. The electrode configuration used in vivo is often optimised for a specific anatomy and biological or clinical outcomes, not electrochemical performance. Electrode materials and geometries are constrained by biostability and biocompatibility issues and may be required to function clinically for decades. We performed benchtop electrochemistry, with changes in reference electrode, smaller counter-electrode sizes, and three- or two-electrode configurations. We detail the effects different electrode configurations have on typical electroanalytical techniques used on implanted electrodes. Changes in reference electrode required correction by application of an offset potential. In a two-electrode configuration with similar working and reference/counter-electrode sizes, the electrochemical response was dictated by the rate-limiting charge transfer step at either electrode. This could invalidate calibration curves, standard analytical methods, and equations, and prevent use of commercial simulation software. We provide methods for determining if an electrode configuration is affecting the in vivo electrochemical response. We recommend sufficient details be provided in experimental sections on electronics, electrode configuration, and their calibration to justify results and discussion. In conclusion, the experimental limitations of performing in vivo electrochemistry may dictate what types of measurements and analyses are possible, such as obtaining relative rather than absolute measurements.

11.
J Neural Eng ; 20(3)2023 05 15.
Artigo em Inglês | MEDLINE | ID: mdl-36595262

RESUMO

Objective.Endovascular neuromodulation has attracted substantial interest in recent years as a minimally invasive approach to treat neurological disorders. In this study, we investigated with a computational model the feasibility of stimulating peripheral nerves with an endovascular stent-mounted electrode array.Approach.Anatomically realistic FEM models were constructed for the pudendal and vagal neurovascular bundles. The electromagnetic fields generated from electrical stimuli were computed using Sim4Life NEURON models to predict dynamic axonal responses.Main results.The models predict that the stimulation thresholds of the endovascular stent-electrode array configurations tested are comparable to that of ring electrodes and are dependent on the inter-electrode distance and orientation of the device. Arranging multiple electrodes along the longitudinal axis of the nerve lowers surface charge density without sacrificing axon recruitment, whereas arranging electrodes along the circumference of the blood vessel reduces the risk of misalignment but lowers axon recruitment.Significance.Overall, this study predicts that the endovascular stent-electrode array is a feasible stimulation option for peripheral nerves, and the electrode array can be flexibly optimized to achieve the lowest stimulation threshold.


Assuntos
Axônios , Nervos Periféricos , Eletrodos , Axônios/fisiologia , Simulação por Computador , Nervos Periféricos/fisiologia , Stents , Estimulação Elétrica/métodos , Eletrodos Implantados
12.
J Neural Eng ; 19(5)2022 10 28.
Artigo em Inglês | MEDLINE | ID: mdl-36240737

RESUMO

Objective.The aim of this work was to assess vascular remodeling after the placement of an endovascular neural interface (ENI) in the superior sagittal sinus (SSS) of sheep. We also assessed the efficacy of neural recording using an ENI.Approach.The study used histological analysis to assess the composition of the foreign body response. Micro-CT images were analyzed to assess the profiles of the foreign body response and create a model of a blood vessel. Computational fluid dynamic modeling was performed on a reconstructed blood vessel to evaluate the blood flow within the vessel. Recording of brain activity in sheep was used to evaluate efficacy of neural recordings.Main results.Histological analysis showed accumulated extracellular matrix material in and around the implanted ENI. The extracellular matrix contained numerous macrophages, foreign body giant cells, and new vascular channels lined by endothelium. Image analysis of CT slices demonstrated an uneven narrowing of the SSS lumen proportional to the stent material within the blood vessel. However, the foreign body response did not occlude blood flow. The ENI was able to record epileptiform spiking activity with distinct spike morphologies.Significance. This is the first study to show high-resolution tissue profiles, the histological response to an implanted ENI and blood flow dynamic modeling based on blood vessels implanted with an ENI. The results from this study can be used to guide surgical planning and future ENI designs; stent oversizing parameters to blood vessel diameter should be considered to minimize detrimental vascular remodeling.


Assuntos
Procedimentos Endovasculares , Corpos Estranhos , Animais , Ovinos , Remodelação Vascular , Stents , Seio Sagital Superior
13.
Annu Int Conf IEEE Eng Med Biol Soc ; 2021: 5686-5689, 2021 11.
Artigo em Inglês | MEDLINE | ID: mdl-34892412

RESUMO

AIM: Brain-Computer Interfaces (BCIs) hold promise to provide people with partial or complete paralysis, the ability to control assistive technology. This study reports offline classification of imagined and executed movements of the upper and lower limb in one participant with multiple sclerosis and people with no limb function deficits. METHODS: We collected neural signals using electroencephalography (EEG) while participants performed executed and imagined motor tasks as directed by prompts shown on a screen. RESULTS: Participants with no limb function attained >70% decoding accuracy on their best-imagined task compared to rest and on at-least one task comparison. The participant with multiple sclerosis also achieved accuracies within the range of participants with no limb function loss.Clinical Relevance - While only one case study is provided it was promising that the participant with MS was able to achieve comparable classification to that of the seven healthy controls. Further studies are needed to assess whether people suffering from MS may be able to use a BCI to improve their quality of life.


Assuntos
Interfaces Cérebro-Computador , Esclerose Múltipla , Eletroencefalografia , Estudos de Viabilidade , Humanos , Qualidade de Vida
14.
Annu Int Conf IEEE Eng Med Biol Soc ; 2021: 5966-5969, 2021 11.
Artigo em Inglês | MEDLINE | ID: mdl-34892477

RESUMO

Implantable neuromodulation devices that interface with the peripheral nervous system are a promising approach to restore functions lost to nerve damage. Existing nerve stimulation electrodes require direct contact with the target nerve and are associated with mechanical nerve damage and fibrous tissue encapsulation. Endovascularly delivered electrode arrays may provide a less invasive solution. Using a hybrid tissue conductor-neuron model and computational simulations, this study demonstrates the feasibility of delivering electrical stimulation of a peripheral nerve from a blood vessel in the vicinity of the target and predicts that the stimulation intensity required strongly depends on nerve-vessel distance and relative orientation, which are important factors to consider when screening candidate blood vessels for electrode implantation.


Assuntos
Tecido Nervoso , Nervos Periféricos , Simulação por Computador , Estimulação Elétrica , Eletrodos
15.
Annu Int Conf IEEE Eng Med Biol Soc ; 2021: 6771-6774, 2021 11.
Artigo em Inglês | MEDLINE | ID: mdl-34892662

RESUMO

Non-invasive intracranial pressure (ICP) monitoring is possible using venous ophthalmodynamometry to observe a pulsation in retinal blood vessels when intraocular pressure (IOP) exceeds ICP. Here, we identify features in the eye - optic disc and retinal blood vessel locations - and identify pulsation in large retinal blood vessels. The relationship between force and the magnitude of pulsation is used to estimate ICP when force is applied to the eye to gradually increase IOP over time. This approach yields 77% accuracy in automatically observing vessel pulsation.Clinical Relevance - Non-invasive ICP monitoring is desirable to improve patient outcome by reducing potential trauma and complications associated with invasive assessment with intracranial sensors or lumbar puncture.


Assuntos
Pressão Intracraniana , Veia Retiniana , Humanos , Pressão Intraocular , Oftalmodinamometria , Tonometria Ocular
16.
IEEE Open J Eng Med Biol ; 2: 74-83, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33997788

RESUMO

The pace of research and development in neuroscience, neurotechnology, and neurorehabilitation is rapidly accelerating, with the number of publications doubling every 4.2 years. Maintaining this progress requires technological standards and scientific reporting guidelines to provide frameworks for communication and interoperability. The present lack of such neurotechnology standards limits the transparency, repro-ducibility, and meta-analysis of this growing body of literature, posing an ongoing barrier to research, clinical, and commercial objectives. Continued neurotechnological innovation requires the development of some minimal standards to promote integration between this broad spectrum of technologies and therapies. To preserve design freedom and accelerate the translation of research into safe and effective technologies with maximal user benefit, such standards must be collaboratively co-developed by the full range of neuroscience and neurotechnology stakeholders. This paper summarizes the preliminary recommendations of IEEE P2794 Standards Working Group, developing a Reporting Standard for in-vivo Neural Interface Research (RSNIR).

17.
J Neurointerv Surg ; 13(2): 102-108, 2021 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-33115813

RESUMO

BACKGROUND: Implantable brain-computer interfaces (BCIs), functioning as motor neuroprostheses, have the potential to restore voluntary motor impulses to control digital devices and improve functional independence in patients with severe paralysis due to brain, spinal cord, peripheral nerve or muscle dysfunction. However, reports to date have had limited clinical translation. METHODS: Two participants with amyotrophic lateral sclerosis (ALS) underwent implant in a single-arm, open-label, prospective, early feasibility study. Using a minimally invasive neurointervention procedure, a novel endovascular Stentrode BCI was implanted in the superior sagittal sinus adjacent to primary motor cortex. The participants undertook machine-learning-assisted training to use wirelessly transmitted electrocorticography signal associated with attempted movements to control multiple mouse-click actions, including zoom and left-click. Used in combination with an eye-tracker for cursor navigation, participants achieved Windows 10 operating system control to conduct instrumental activities of daily living (IADL) tasks. RESULTS: Unsupervised home use commenced from day 86 onwards for participant 1, and day 71 for participant 2. Participant 1 achieved a typing task average click selection accuracy of 92.63% (100.00%, 87.50%-100.00%) (trial mean (median, Q1-Q3)) at a rate of 13.81 (13.44, 10.96-16.09) correct characters per minute (CCPM) with predictive text disabled. Participant 2 achieved an average click selection accuracy of 93.18% (100.00%, 88.19%-100.00%) at 20.10 (17.73, 12.27-26.50) CCPM. Completion of IADL tasks including text messaging, online shopping and managing finances independently was demonstrated in both participants. CONCLUSION: We describe the first-in-human experience of a minimally invasive, fully implanted, wireless, ambulatory motor neuroprosthesis using an endovascular stent-electrode array to transmit electrocorticography signals from the motor cortex for multiple command control of digital devices in two participants with flaccid upper limb paralysis.


Assuntos
Atividades Cotidianas , Interfaces Cérebro-Computador , Neuroestimuladores Implantáveis , Córtex Motor/fisiologia , Paralisia/terapia , Índice de Gravidade de Doença , Atividades Cotidianas/psicologia , Idoso , Interfaces Cérebro-Computador/psicologia , Estudos de Viabilidade , Feminino , Humanos , Imageamento Tridimensional/métodos , Masculino , Pessoa de Meia-Idade , Córtex Motor/diagnóstico por imagem , Paralisia/diagnóstico por imagem , Paralisia/fisiopatologia , Estudos Prospectivos
18.
Int Forum Allergy Rhinol ; 11(4): 747-754, 2021 04.
Artigo em Inglês | MEDLINE | ID: mdl-32929891

RESUMO

BACKGROUND: Refractory chronic rhinosinusitis (CRS) remains a significant burden for patients, often leaving them with few therapeutic options that provide low-morbidity, long-term, and meaningful symptomatologic and endoscopic disease improvement. Macrolides have long been thought to offer both an immunomodulatory and antimicrobial effect. Our objective was to evaluate the efficacy of low-dose, long-term azithromycin in a carefully selected high-risk population failing appropriate medical therapy of budesonide nasal irrigations (BNIs) and endoscopic sinus surgery (ESS). METHODS: A double-blind, randomized, placebo-controlled trial was completed in a single tertiary-care center assessing the addition of 250 mg azithromycin, 3 times per week for 16 weeks, in adults failing ESS and high-volume BNIs. Associated comorbidities, as well as symptomatologic, microbiologic, and serologic values, were systematically collected. RESULTS: A total of 128 patients were enrolled and underwent ESS followed by BNI. At the 4-month post-ESS visit, 48 patients showed disease persistence and were randomized to azithromycin or placebo. Overall, azithromycin, when compared with placebo, did not show a statistically significant difference in disease clearance (54% vs 33%, respectively; p = 0.146), although patients with disease clearance who were on azithromycin showed significantly better 22-item Sino-Nasal Outcome Test score improvements than patients on placebo (18 vs -0.9, respectively; p = 0.046). In a subgroup analysis excluding aspirin-exacerbated respiratory disease (AERD) patients, azithromycin significantly improved disease clearance when compared with placebo (71% vs 35%, respectively; p = 0.031), with a number needed to treat of 3 (2.8). CONCLUSION: Low-dose azithromycin is a therapeutic option with few side effects. Its use can show favorable clinical outcomes in this difficult-to-treat population, especially if patients are AERD-negative.


Assuntos
Antibacterianos , Azitromicina , Rinite , Sinusite , Corticosteroides , Adulto , Antibacterianos/uso terapêutico , Azitromicina/uso terapêutico , Doença Crônica , Método Duplo-Cego , Endoscopia , Humanos , Rinite/tratamento farmacológico , Rinite/cirurgia , Sinusite/tratamento farmacológico , Sinusite/cirurgia , Resultado do Tratamento
19.
Methods Mol Biol ; 2153: 9-31, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-32840769

RESUMO

DNA double-strand breaks (DSBs) represent the most toxic form of DNA damage and can arise in either physiological or pathological conditions. If left unrepaired, these DSBs can lead to genome instability which serves as a major driver to tumorigenesis and other pathologies. Consequently, localizing DSBs and understanding the dynamics of break formation and the repair process are of great interest for dissecting underlying mechanisms and in the development of targeted therapies. Here, we describe END-seq, a highly sensitive next-generation sequencing technique for quantitatively mapping DNA double-strand breaks (DSB) at nucleotide resolution across the genome in an unbiased manner. END-seq is based on the direct ligation of a sequencing adapter to the ends of DSBs and provides information about DNA processing (end resection) at DSBs, a critical determinant in the selection of repair pathways. The absence of cell fixation and the use of agarose for embedding cells and exonucleases for blunting the ends of DSBs are key advances that contribute to the technique's increased sensitivity and robustness over previously established methods. Overall, END-seq has provided a major technical advance for mapping DSBs and has also helped inform the biology of complex biological processes including genome organization, replication fork collapse and chromosome fragility, off-target identification of RAG recombinase and gene-editing nucleases, and DNA end resection at sites of DSBs.


Assuntos
Biologia Computacional/métodos , Quebras de DNA de Cadeia Dupla , Reparo do DNA , Edição de Genes/métodos , Desoxirribonucleases/metabolismo , Exonucleases/metabolismo , Sequenciamento de Nucleotídeos em Larga Escala , Humanos , Software , Sequenciamento Completo do Genoma
20.
J Neural Eng ; 18(2)2021 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-33339011

RESUMO

Objective. The common spatial patterns (CSP) algorithm is an effective method to extract discriminatory features from electroencephalography (EEG) to be used by a brain-computer interface (BCI). However, informed selection of CSP filters typically requires oversight from a BCI expert to accept or reject filters based on the neurophysiological plausibility of their activation patterns. Our goal was to identify, analyze and automatically classify prototypical CSP patterns to enhance the prediction of motor imagery states in a BCI.Approach. A data-driven approach that used four publicly available EEG datasets was adopted. Cluster analysis revealed recurring, visually similar CSP patterns and a convolutional neural network was developed to distinguish between established CSP pattern classes. Furthermore, adaptive spatial filtering schemes that utilize the categorization of CSP patterns were proposed and evaluated.Main results. Classes of common neurophysiologically probable and improbable CSP patterns were established. Analysis of the relationship between these categories of CSP patterns and classification performance revealed discarding neurophysiologically improbable filters can decrease decoder performance. Further analysis revealed that the spatial orientation of EEG modulations can evolve over time, and that the features extracted from the original CSP filters can become inseparable. Importantly, it was shown through a novel adaptive CSP technique that adaptation in response to these emerging patterns can restore feature separability.Significance. These findings highlight the importance of considering and reporting on spatial filter activation patterns in both online and offline studies. They also emphasize to researchers in the field the importance of spatial filter adaptation in BCI decoder design, particularly for online studies with a focus on training users to develop stable and suitable brain patterns.


Assuntos
Interfaces Cérebro-Computador , Algoritmos , Eletroencefalografia/métodos , Imagens, Psicoterapia , Imaginação/fisiologia , Processamento de Sinais Assistido por Computador
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